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GENIPIN structure
GENIPIN structure

GENIPIN

Iupac Name:methyl (1R,4aS,7aS)-1-hydroxy-7-(hydroxymethyl)-1,4a,5,7a-tetrahydrocyclopenta[c]pyran-4-carboxylate
CAS No.: 6902-77-8
Molecular Weight:226.23
Modify Date.: 2022-11-22 22:15
Introduction: Genipin is an active aglycone derived from an iridoid glycoside called geniposide, which is found in the fruit of Gardenia jasminoides Ellis. Genipin is a hydrolytic product of geniposide. Genipin has been used in traditional Chinese medicine. Genipin is GENIPINSupplier View more+
1. Names and Identifiers
1.1 Name
GENIPIN
1.2 Synonyms

(+)-Genipin cyclopenta(c)pyran-4-carboxylicacid,1,4a-alpha,5,7a-alpha-tetrahydro-1-hydrox Cyclopenta[c]pyran-4-carboxylic acid, 1,4a,5,7a-tetrahydro-1-hydroxy-7-(hydroxymethyl)-, methyl ester, (1R,4aS,7aS)- Cyclopenta[c]pyran-4-carboxylic acid, 1,4a,5,7a-tetrahydro-1-hydroxy-7-(hydroxymethyl)-, methyl ester, [1R-(1α,4aα,7aα)]- Cyclopenta[c]pyran-4-carboxylic acid, 1,4aα,5,7aα-tetrahydro-1-hydroxy-7-(hydroxymethyl)-, methyl ester enipin Methyl (1S,2R,6S)-2-hydroxy-9-(hydroxymethyl)-3-oxabicyclo[4.3.0]nona-4,8-diene-5-carboxylate Methyl (1R,2R,6S)-2-hydroxy-9-(hydroxymethyl)-3-oxabicyclo[4.3.0]nona-4,8-diene-5-carboxylate Methyl (1S,2R,6S)-2-Hydroxy-9-(hydroxymethyl)-3-oxabicyclo[4.3.0]nona-4,8-diene-5-carboxylate

1.3 CAS No.
6902-77-8
1.4 CID
442424
1.5 EINECS(EC#)
636-196-5
1.6 Molecular Formula
C11H14O5 (isomer)
1.7 Inchi
InChI=1S/C11H14O5/c1-15-10(13)8-5-16-11(14)9-6(4-12)2-3-7(8)9/h2,5,7,9,11-12,14H,3-4H2,1H3/t7-,9-,11-/m1/s1
1.8 InChkey
AZKVWQKMDGGDSV-BCMRRPTOSA-N
1.9 Canonical Smiles
COC(=O)C1=COC(C2C1CC=C2CO)O
1.10 Isomers Smiles
COC(=O)C1=CO[C@H]([C@H]2[C@@H]1CC=C2CO)O
2. Properties
2.1 Density
1.1230 (rough estimate)
2.1 Melting point
118.0 to 123.0 °C
2.1 Boiling point
287.83°C (rough estimate)
2.1 Refractive index
1.4720 (estimate)
2.1 Flash Point
164.9 oC
2.1 Precise Quality
226.08400
2.1 PSA
75.99000
2.1 logP
-0.05330
2.1 Solubility
DMSO: ≥25mg/mL
2.2 Λmax
240nm(MeOH)(lit.)
2.3 Appearance
White to Almost white powder to crystal
2.4 Chemical Properties
White powder
2.5 Color/Form
Powder
2.6 pKa
12.06±0.60(Predicted)
2.7 Water Solubility
DMSO: ≥25mg/mL
3. Use and Manufacturing
3.1 Usage
Genipin is an active aglycone derived from an iridoid glycoside called geniposide, which is found in the fruit of Gardenia jasminoides Ellis. Genipin is a hydrolytic product of geniposide. Genipin has been used in traditional Chinese medicine. Genipin is GENIPINSupplier
4. Safety and Handling
4.1 Symbol
GHS06;
4.1 Hazard Codes
Xn
4.1 Signal Word
DANGER
4.1 Risk Statements
22
4.1 Safety Statements
3/14-36/37/39
4.1 Packing Group
III
4.1 Hazard Class
6.1
4.1 Hazard Declaration
H301; H319
4.1 RIDADR
UN 2811 6.1/PG 3
4.1 Caution Statement
P301 + P310; P305 + P351 + P338
4.1 WGK Germany
3
4.1 RTECS
GY5828000
4.1 Safety
Poison by ingestion, intravenous, and intraperitoneal routes. Experimental reproductive effects. When heated to decomposition it emits acrid smoke and irritating fumes. See also ESTERS.
4.2 Specification

The IUPAC name of Genipin is methyl (1R,4aS,7aS)-1-hydroxy-7-(hydroxymethyl)-1,4a,5,7a-tetrahydrocyclopenta[c]pyran-4-carboxylate . With the CAS registry number 6902-77-8, it is also named as Cyclopenta(c)pyran-4-carboxylic acid, 1,4a-alpha,5,7a-alpha-tetrahydro-1-hydroxy-7-(hydroxymethyl)-, methyl ester .

The Genipin can be found in the gardenia fruit extract. It is is used to relieve the symptoms of type 2 diabetes in traditional Chinese medicine. Research indicated that this product is indeed effective. This research is conducted at the Beth Israel Deaconess Medical Center and Harvard Medical School . It is also used as a cross-linking agent for immobilized enzyme, the raw materials for gardenia blue pigment preparation, the regulating agent for drug delivery, as well as the intermediate for alkaloid synthetic etc.

The Genipin  is poison by ingestion, intravenous, and intraperitoneal routes. When heated to decomposition it emits acrid smoke and irritating fumes. Do not breathe dust.

The other characteristics of this product can be summarized as: (1)#H bond acceptors: 5 ; (2)#H bond donors: 2 ; (3)#Freely Rotating Bonds: 5 ; (4)Index of Refraction: 1.564 ; (5)Molar Refractivity: 54.52 cm3 ; (6)Molar Volume: 167.4 cm3 ; (7)Polarizability: 21.61×10-24 cm3 ; (8)Surface Tension: 53.5 dyne/cm ; (9)Enthalpy of Vaporization: 77.3 kJ/mol ; (10)Vapour Pressure: 1.17E-08 mmHg at 25°C ; (11)Rotatable Bond Count: 3 ; (12)Exact Mass: 226.084124 ; (13)MonoIsotopic Mass: 226.084124 ; (14)Topological Polar Surface Area: 76 ; (15)Heavy Atom Count: 16.

People can use the following data to convert to the molecule structure. SMILES: O=C(OC)\C1=C\O[C@@H](O)[C@@H]2\C(=C/C[C@H]12)CO; InChI: InChI=1/C11H14O5/c1-15-10(13)8-5-16-11(14)9-6(4-12)2-3-7(8)9/h2,5,7,9,11-12,14H,3-4H2,1H3/t7-,9-,11-/m1/s1.

The following is the toxicity data which has been tested. 

Organism Test Type Route Reported Dose (Normalized Dose) Effect Source
mouse LD50 intraperitoneal 190mg/kg (190mg/kg)   Yakugaku Zasshi. Journal of Pharmacy. Vol. 94, Pg. 157, 1974.
mouse LD50 intravenous 153mg/kg (153mg/kg)   Yakugaku Zasshi. Journal of Pharmacy. Vol. 94, Pg. 157, 1974.
mouse LD50 oral 237mg/kg (237mg/kg)   Yakugaku Zasshi. Journal of Pharmacy. Vol. 94, Pg. 157, 1974.
rat LD oral > 50mg/kg (50mg/kg)   Oyo Yakuri. Pharmacometrics. Vol. 19, Pg. 259, 1980.

5. MSDS

2.Hazard identification

2.1 Classification of the substance or mixture

Acute toxicity - Oral, Category 3

2.2 GHS label elements, including precautionary statements

Pictogram(s)
Signal word

Danger

Hazard statement(s)

H301 Toxic if swallowed

Precautionary statement(s)
Prevention

P264 Wash ... thoroughly after handling.

P270 Do not eat, drink or smoke when using this product.

Response

P301+P310 IF SWALLOWED: Immediately call a POISON CENTER/doctor/\u2026

P321 Specific treatment (see ... on this label).

P330 Rinse mouth.

Storage

P405 Store locked up.

Disposal

P501 Dispose of contents/container to ...

2.3 Other hazards which do not result in classification

none

7. Other Information
7.0 Chemical Properties
White powder
7.1 Uses
Genipin is an active aglycone derived from an iridoid glycoside called geniposide, which is found in the fruit of Gardenia jasminoides Ellis. Genipin is a hydrolytic product of geniposide. Genipin has been used in traditional Chinese medicine. Genipin is
8. Computational chemical data
  • Molecular Weight: 226.23g/mol
  • Molecular Formula: C11H14O5
  • Compound Is Canonicalized: True
  • XLogP3-AA: -0.7
  • Exact Mass: 226.08412354
  • Monoisotopic Mass: 226.08412354
  • Complexity: 357
  • Rotatable Bond Count: 3
  • Hydrogen Bond Donor Count: 2
  • Hydrogen Bond Acceptor Count: 5
  • Topological Polar Surface Area: 76
  • Heavy Atom Count: 16
  • Defined Atom Stereocenter Count: 3
  • Undefined Atom Stereocenter Count: 0
  • Defined Bond Stereocenter Count: 0
  • Undefined Bond Stereocenter Count: 0
  • Isotope Atom Count: 0
  • Covalently-Bonded Unit Count: 1
  • CACTVS Substructure Key Fingerprint: AAADccBwOAAAAAAAAAAAAAAAAAAAAQAAAAAgAAAAAAAAAEAAAAAAGgAACAAADQCwgAMCCAAABgCIAiDSCAAACAAgIAAACAEAAEgQFBIAIQAAUAAEwAAIMIPIbAgOgAAAAAAAAAAAAAAAAAAAAAAAAAAAAA==
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10. Realated Product Infomation