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Pentafluoropyridine structure

Pentafluoropyridine structure, featuring a pyridine ring fully substituted by five fluorine atoms, is an organofluorine compound widely utilized in pharmaceuticals and material science. Owing to its unique chemical properties, it plays a critical role in synthetic chemistry and catalysis. Madison1 MIN READSeptember 18, 2024

What is Pentafluoropyridine?

Fluorine, heterocyclic, and chiral compounds are the three main features of modern drug and pesticide synthesis. Among these, pyridine-based fluorine compounds are the most commonly used due to current synthesis technology. Pyridine fluorinated compounds combine fluorine, nitrogen-containing heterocyclic, and chiral properties. In recent years, compounds with these characteristics have been widely studied and applied in the fields of medicine and pesticides. Pentafluoropyridine is an important intermediate in both industries and has significant research value. Fluorine, being highly electronegative, can reduce the oxidation rate of materials, making fluorine-substituted organic materials highly valuable in aerospace and biomedical applications.


Pentafluoropyridine structure and formula

Pentafluoropyridine formula: C5F5N; Molecular weight: 169; Boiling point: 84℃; Structure:

Pentafluoropyridine structure

Pentafluoropyridine structure


Analysis of Pentafluoropyridine structure

Lido et al. optimized the ground state geometric structure of Pentafluoropyridine using B3LYP, M062X, and SA-CASSCF(8,8) methods with the 6-311G* basis set. The results indicated that the ground state geometric structures obtained under different methods were similar, all being planar structures with C2v symmetry. The C-C and C-F bond lengths in the S0 state of Pentafluoropyridine were 1.38-1.39Å and 1.31-1.33Å, respectively, while the C-N bond length was 1.31Å, slightly shorter than the C-C bond length.


Pentafluoropyridine uses

Synthesis of Highly Functionalized Heterocycles and Macrocycles: Pentafluoropyridine is a multifunctional “building block” for synthesizing various substituted pyridines and macrocyclic derivatives with potential applications in life sciences and supramolecular chemistry.


Synthesis of Pyridine Derivatives: H. Benmansour and colleagues synthesized a series of pyridine derivatives using Pentafluoropyridine as a raw material, utilizing nucleophilic aromatic substitution and palladium-catalyzed coupling reactions.


Peptide System Modification: Pentafluoropyridine, as a perfluoroaromatic reagent, has proven to be a highly reactive electrophilic reagent, enabling SNAr arylation reactions with peptide side chains under mild conditions, offering enhanced proteolytic stability in drug-related peptides.


Amide Synthesis: W. D. G. Brittain reported the application of Pentafluoropyridine in carboxylic acid deoxyfluorination for synthesizing acyl fluorides, which can be further used in one-pot amide bond formation.


Applications in Polymers: Johncock, Hewins, and Cunliffe were the first to report the use of Pentafluoropyridine in polymer synthesis, aiming to develop materials with enhanced structure and oxidative stability for aerospace applications.


Gas Chromatography-Mass Spectrometry Analysis: Sanka N. Atapattu et al. developed a simple, low-cost method using Pentafluoropyridine as a derivatizing reagent to analyze endocrine-disrupting chemicals using solid-phase analytical derivatization technology.


Recommendations

Due to its unique chemical properties and extensive application potential, Pentafluoropyridine has become an indispensable compound in the pharmaceutical and material science fields. Its excellent performance in catalysis and synthesis reactions continues to drive technological advancements. For more information on Pentafluoropyridine and supplier details, visit Guidechem.


References:

[1] Sandford G. Highly functionalized heterocycles and macrocycles from pentafluoropyridine [M]. 2005.
[2] Brittain W D G, Cobb S L. Carboxylic acid deoxyfluorination and one-pot amide bond formation using pentafluoropyridine (PFP) [J]. Organic Letters, 2021, 23(15): 5793-5798.
[3] Benmansour H, Chambers R D, Hoskin P R, et al. Multi-substituted heterocycles [J]. Journal of Fluorine Chemistry, 2001, 112(1): 133-137.
[4] Atapattu S N, Rosenfeld J M. Solid-phase analytical derivatization of anthropogenic and natural phenolic estrogen mimics with pentafluoropyridine for gas chromatography–mass spectrometry [J]. Journal of Chromatography A, 2011, 1218(51): 9135-9141.
[5] Gautam R, Geniza I, Iacono S T, et al. Perfluoropyridine: discovery, chemistry, and applications in polymers and material science [J]. Molecules, 2022, 27(5): 1616.
[6] Li D, Zhang S. Molecular structure during non-adiabatic relaxation of pentafluoropyridine in the excited state [J]. Acta Physica Sinica, 2024, 73(04): 125-132.
[7] Zhong X. Research and application of multi-fluoropyridine synthesis catalysts [D]. Xiangtan University, 2009.
[8] Zhang W, Xu J, Sun Z, et al. Synthesis and application of halogenated pyridine compounds [J]. Fine Chemical Intermediates, 2006, (04): 1-6.
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